This experiment collects RNA-seq data from human and chimpanzee iPSCs that are then differntiated into definitive endoderm. There are 2 species (humans and chimps) with 6 human iPSC lines with 2 replicates and 4 chimp iPSC lines with 4 replicates. RNA was extracted from the iPSCs for each day of the differentation for a total of 4 days.
It was performed by Bryan Pavlovic, Sammy Thomas, and Lauren Blake in the Yoav Gilad lab at the University of Chicago.
Workflow template for statistical computing projects at Stephens Lab.
Now that you have a copy of ashlar. Edit the following content and add your project information.
The idea is to work from the master branch and then add to both master branch and gh-pages branch. Using this workflow, gh-pages branch mirrors master branch. Advanced users can modify .gitignore and choose to not to publish selected files.
git checkout master
cd analysis
git add *Rmd *html figure/* (or git add --all)
git commit -m "add new analysis"
git push origin master
git checkout gh-pages
git merge master
git push origin gh-pages