Last updated: 2018-08-25

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• ✔ Seed: set.seed(12345)

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• ✔ Session information: recorded

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• ✔ Repository version: 241c630

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  Unstaged changes:
      Modified:   analysis/_site.yml
      Modified:   analysis/about.Rmd
      Deleted:    analysis/chunks.R
      Modified:   analysis/index.Rmd
      Modified:   analysis/license.Rmd
  
  

  Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.

# Load file

year_month_date <- read.csv("../data/BAN_dates_txt.csv", header = TRUE, stringsAsFactors = FALSE)

dim(year_month_date)

[1] 55 17

difftime(year_month_date[1,6], year_month_date[1,4], units = c("days"))

Time difference of 5 days

for (i in 1:55){
  # T0 to T1
    if(year_month_date[i,6] == "."){print(NA)}
  else{
  # Admission to discharge
  print(round(as.numeric(difftime(year_month_date[i,6], year_month_date[i,4], units = c("days")))), digits = 0)}
  
  
  # T1 to T2
  if(year_month_date[i,8] == "."){print(NA)}
  else{
  # Admission to discharge
  print(round(as.numeric(difftime(year_month_date[i,8], year_month_date[i,4], units = c("days")))), digits = 0)}
  
  # T2 to T3 
  
  if(year_month_date[i,13] == "."){next}
  else{
  # Admission to time 3
  print(round(as.numeric(difftime(year_month_date[i,13], year_month_date[i,4], units = c("days")))))}
  
}

[1] 5
[1] 12
[1] 142
[1] 1
[1] 24
[1] 139
[1] 1
[1] 8
[1] 5
[1] 69
[1] 207
[1] 4
[1] 54
[1] 1
[1] 31
[1] 102
[1] 1
[1] 42
[1] 160
[1] 1
[1] 18
[1] 126
[1] 1
[1] 25
[1] 130
[1] 1
[1] 32
[1] 117
[1] 4
[1]10
[1] 3
[1] 11
[1] 95
[1] 1
[1] 37
[1] 138
[1] 4
[1] 54
[1] 143
[1] 1
[1] 28
[1] 121
[1] 1
[1] 19
[1] 110
[1] 1
[1] 27
[1] 114
[1] 2
[1] 43
[1] 2
[1] 21
[1] 133
[1] 2
[1] 37
[1] 133
[1] 2
[1] 66
[1] 154
[1] 1
[1] 25
[1] 3
[1]10
[1] 99
[1] 3
[1] 39
[1] 148
[1] 1
[1] 74
[1] 164
[1] 2
[1] 21
[1] 104
[1] 2
[1] 29
[1] 1
[1] 25
[1] 132
[1] 3
[1] 40
[1] 1
[1] 37
[1] 206
[1] 1
[1] 21
[1] 130
[1] 1
[1] 75
[1] 2
[1] 57
[1] 3
[1] 31
[1] 148
[1] 5
[1] 34
[1] 7
[1] 23
[1] 2
[1] 7
[1] 1
[1] 18
[1] 1
[1] 33
[1] 3
[1] 8
[1] 121
[1] 4
[1] 19
[1] 1
[1] 28
[1] 129
[1] 4
[1] 30
[1] 4
[1] 24
[1] 154
[1] 4
[1] 34
[1] 145
[1] 4
[1] 36
[1] 5
[1] 38
[1] 6
[1] 28
[1] 143
[1]10
[1] 24
[1] 6
[1] 14
[1] 175
[1] 4
[1] 7
[1] 4
[1] 5
[1] 3
[1] 26
[1] 151
[1] 3
[1] 20
[1] 125
[1] 5
[1] 19
[1] 124

for (i in 1:55){
  if(year_month_date[i,16] == ""){next}
  else{
  # Admission to discharge
  print(round(as.numeric(difftime(year_month_date[i,16], year_month_date[i,4], units = c("days")))), digits = 0)}
  
  if(year_month_date[i,17] == ""){next}
  else{
  # Admission to time 3
  print(round(as.numeric(difftime(year_month_date[i,17], year_month_date[i,4], units = c("days")))))}
  
}

[1] 577
[1] 947
[1] 526
[1] 947
[1] 540
[1] 925
[1] 432
[1] 825
[1] 438
[1] 822
[1] 483
[1] 861

for (i in 1:55){
    if(year_month_date[i,8] == "."){print(NA)}
  else{
  # Admission to discharge
  print(round(as.numeric(difftime(year_month_date[i,8], year_month_date[i,6], units = c("days")))), digits = 0)}
}

[1] 7
[1] 23
[1] 7
[1] 64
[1] 50
[1] 30
[1] 41
[1] 17
[1] 24
[1] 31
[1] 6
[1] 8
[1] 36
[1] 50
[1] 27
[1] 18
[1] 26
[1] 41
[1] 19
[1] 35
[1] 64
[1] 24
[1] 7
[1] 36
[1] 73
[1] 19
[1] 27
[1] 24
[1] 37
[1] 36
[1] 20
[1] 74
[1] 55
[1] 28
[1] 29
[1] 16
[1] 5
[1] 17
[1] 32
[1] 5
[1] 15
[1] 27
[1] 26
[1] 20
[1] 30
[1] 32
[1] 33
[1] 22
[1] 14
[1] 8
[1] 3
[1] 1
[1] 23
[1] 17
[1] 14

# Load file

birth_age <- read.csv("../data/birthday_age.csv", header = TRUE, stringsAsFactors = FALSE)

# Birthday to bloodwork in weeks --> years

for (i in 1:nrow(birth_age)){
  # Admission to discharge
 print(round(as.numeric(difftime(birth_age[i,4], birth_age[i,3], units = c("weeks")), digits = 0))/52.1429)
}

[1] 24.58628
[1] 24.75888
[1] 25.14245
[1] 19.00546
[1] 26.69587
[1] 29.86025
[1] 26.63833
[1] 21.80546
[1] 32.98627

sessionInfo()

R version 3.4.3 (2017-11-30)
Platform: x86_64-apple-darwin15.6.0 (64-bit)
Running under: OS X El Capitan 10.11.6

Matrix products: default
BLAS: /Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libRblas.0.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libRlapack.dylib

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

loaded via a namespace (and not attached):
 [1] workflowr_1.1.1   Rcpp_0.12.18      digest_0.6.15    
 [4] rprojroot_1.3-2   R.methodsS3_1.7.1 backports_1.1.2  
 [7] git2r_0.23.0      magrittr_1.5      evaluate_0.11    
[10] stringi_1.2.4     whisker_0.3-2     R.oo_1.22.0      
[13] R.utils_2.6.0     rmarkdown_1.10    tools_3.4.3      
[16] stringr_1.3.1     yaml_2.2.0        compiler_3.4.3   
[19] htmltools_0.3.6   knitr_1.20       

This reproducible R Markdown analysis was created with workflowr 1.1.1